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Veterinary Laboratory Techniques

Veterinary Laboratory Techniques Unit: 1 Common laboratory equipment and their functions 1.1   microscope: simple, compound an...




Veterinary Laboratory Techniques
Unit: 1
Common laboratory equipment and their functions
1.1  microscope: simple, compound and binocular
1.      Simple microscope: it consists of single lens and single magnifying glass is the example of simple microscope. With the help of simple microscope the image of an object can be magnified up to 10x
Fig: simple microscope (source: https://en.wikipedia.org/wiki/Microscope)
2.      Compound microscope: generally compound microscopes are used in the lab because it consists of different types of lenses. Compound microscope consists of two types of lenses. The magnified image of an object by one lens is further magnified by the second lens due to this the objects can be identified easily. The lenses used in the compound microscope are known as eye piece and objective lens.
Fig: compound microscope (source: www.wikipedia.org)

1.       Eyepiece (ocular lens)
2.       Objective turret, revolver, or revolving nose piece (to hold multiple objective lenses)
3.       Objective lenses
4.       Coarse adjustment
5.       Fine adjustment
6.       Stage (to hold the specimen)
7.       Light source
8.       Diaphragm and condenser 
9.       Mechanical stage

3.      Binocular microscope: the term binocular refers to “relating to or involving the use of both eyes”. So binocular microscope provide us the ability to focus both eyes on an object at the same time so that a single image is seen. This enables judgment of distance and depth of an image.
1.2  Autoclave:
Autoclave is used to sterilize the different equipments. The daily usable equipments such as surgical equipments, rubber gloves etc can be sterilized with the help of autoclave. This is the most important equipment for sterilization. This equipment is large and round in shape. It is made up of strong metal and can tolerate high temperature. Pressure level can be maintained under the autoclave. It can be used with the help of electricity or fire itself.
Fig: autoclave (source: www.wikipedia.org)

Principle of autoclave
On environmental pressure water boils at the temperature of 100 ° Celsius and the temperature cannot be increased more than 100 ° Celsius. If the water is kept at more pressure than the temperature of water can be increased for example
ü  At 5 lb pressure temperature becomes 110 ° Celsius
ü  At 10 lb pressure temperature becomes 115 ° Celsius
ü  At 15 lb pressure temperature becomes 121 ° Celsius
ü  On 121 ° Celsius all the bacteria along with their spores gets destroyed
At laboratory autoclave is run on 15 lb pressure for 15 minutes for sterilization
Process to autoclave
ü  All the glassware to be autoclave is kept on a clean paper and autoclave tape is tied around it.
ü  The packed glassware are kept on autoclave basket and distill water is poured in the autoclave by covering the heating element.
ü  All the utensils to be autoclaved are inserted inside the autoclave. While placing the equipments one third part of the space should be kept empty.
ü  Close the lid of the autoclave. Tight the lid with the help of screw clamp. Open the steam releaser.
ü  Switch on the autoclave. When the water starts the heat the air inside the autoclave also starts to heat and starts to release out.
ü  When all the air comes out steam starts to come out. After the steam releases for 2-3 minutes close the steam releaser.
ü  Now observe whether the pressure increases or not. When the pressure reaches to 15 lb wait for 15 minutes.
ü  After 15 minutes switch off the autoclave, leave the autoclave to cool down, the pressure meter shows the pressure to zero after that open the lid.
ü   All the autoclaved equipment should be air dried.
Incubator:
It is equipment made up of metal. It is box shaped. It is double walled. The walls are thick. It consists of a door. For the maintenance of temperature it also consists of thermostat knob. The temperature of 37 ° Celsius is maintained. For the placement of Petridis it also contains racks made up of wires. It also consists of a thermometer for denoting the temperature. It consists of external metal door and internal glass door.
Fig: incubator (source: www.wikipedia.org)
Procedure to use incubator:
ü  Switch on the incubator.
ü  Roll the knob and maintain the temperature of 37 ° Celsius. Close the door.
ü  Be careful whether the temperature of incubator increases or not.
Taking care of incubator:
ü  Never open the door of incubator when the switch is on.
ü  Never use the knob haphazardly.
ü  Never maintain the temperature over 37 °s Celsius.
ü  Never place the edibles and other materials on the incubator.
ü  If any cultures spill over the incubator clean it immediately.
ü  Clean the incubator with distill water time to time.
Hot air oven:
It is the square box shaped laboratory equipment. It consists of double layered internal and external wall of steel or aluminum. It also consists of a door. It consists of a switch for maintaining the temperature. It also consists of a thermometer. It consists of a hole on both sides for the entrance and exit of the air. It consists of racks for placing different materials. On the lower inner side it consists of heating element for heating purpose. Hot air oven consists of a fan for maintaining the air temperature inside it. The maximum temperature of 180 ° Celsius can be maintained inside the hot air oven.
Fig: hot air oven (source: www.wikipedia.org)
Use of hot air oven:
ü  Sterilization of metals and glasswares can be carried out inside the hot air oven. For ex.surgicalequipments, glass bottles, pipettes, Petridis etc.
ü  Glasswares, tubes, sterilized equipments can be air dried inside the hot air oven.
ü  The slides containg different bacteria can be fixed by keeping inside the hot air oven. For ex. Slides to be used for the staining of bacillus anthracis.
Procedure to use hot air oven:
ü  Connect the plug of hot air oven to the electrical supply and close the door.
ü  Switch on the electrical supply.
ü  Maintain the temperature using the temperature knob. Be careful whether the temperature increases or not.
ü  Keep the equipment to be kept inside it.
ü  After certain time switch off the electrical supply and open the door when the temperature goes down.
Taking care of hot air oven:
ü  Always be sure to perform earthing of the wires to be used on hot air oven.
ü  Plastics, papers, clothes, cottons etc should never be dried on hot air oven.
ü  If water, medias, plastics, etc falls inside the hot air oven they should be immediately removed and cleaned.
ü  Always close the door before running the hot air oven.
ü  Never keep the edibles, clothes etc inside the hot air oven.
ü  Never set the high temperature and go away for another work.
ü  Clean the hot air oven after the completion of work.
Refrigerator:
This machine is simply used for general household purpose but on laboratory it has the most important role. The reagents used in the laboratory are precious and are not available easily on the market so for preserving the reagents, antisera etc for the longer period of time there is great importance of refrigerator. Similarly when the sample brought on the lab cannot be examined immediately on such circumstances there will be the great importance of refrigerator. The media culture plates, culture bottles, Medias; vaccines etc can be stored on the refrigerator for long interval of time. The external part of refrigerator will be plain but the internal part contains different racks and various small rooms on which the bottles etc can be placed according to their shapes. The temperature can be maintained from 2-8 ° Celsius by turning the temperature knob inside it.
Fig: vaccine refrigerator (source: www.surechill.com)
Cold chain maintenance:
Laboratories’ samples, precious reagents, vaccines and other substances that can be degraded by temperature should be kept on constant temperature. Such substances should not be kept on room temperature or higher temperature. The reagents and other substances should be kept on constant low temperature so the refrigerator should always be kept on.
Taking care of refrigerator:
ü  Refrigerator should be always used by connecting the voltage stabilizer.
ü  Always close the door when the refrigerator is on
ü  Unnecessary low temperature should not be set on refrigerator if done so ice formation may occur.
ü  Temperature should be maintained according to the nature of storage materials.
ü  Laboratory refrigerator should not be used for household and kitchen purpose.
ü  Refrigerator should be cleaned time to time.
Centrifuge:
Introduction:
Centrifuge is used for the sedimentation of solid particles from liquid particles. On laboratory centrifuge is used for separation of plasma from blood, separation of serum from blood, separation of solid particles from suspension mixture etc.
Fig: centrifuge (source: www.wikipedia.org)
Principle:
Centrifuge works on the principle of centrifugal force.
Types of centrifuge:
1.      Hand centrifuge
2.      Electric centrifuge
ü  Hand centrifuge:
It must be rotated by hand manually. They are of 2 types containing 2 buckets and 4 buckets. It can be placed on table, chair or stool by fixing tightly. It is used on the area where there is no electrical supply. Normally this type of centrifuge is used while examining the stool or urine sample. The revolution can be maintained up to 2000 rpm.
ü  Electrical centrifuge:
It is used by connecting with electricity. It contains of electrical motor. A knob is present for controlling the rotation. It consists of swing rotor and angle rotor.
Parts of centrifuge:
1.      Pillar
2.      Arm
3.      Bucket
Procedure of using centrifuge:
ü  Open the lid of centrifuge.
ü  Keep the sample to be centrifuged.
ü  All the tubes of centrifuge must contain equal amount of samples.
ü  Place the centrifuge tube on centrifuge bucket.
ü  Switch on the centrifuge.
ü  For increasing the motion of centrifuge keep 1000/rpm after some time increase to 2000/rpm again after some time increase to 3000/rpm.
ü  Rotate the centrifuge for 10-15 minutes as required.
ü  After 15 minutes rotate the knob to zero.
ü  Open the lid only after the centrifuge stops completely.
ü  Remove the centrifuge tubes.
ü  Close the lid after all the centrifuge tubes are taken out.
ü  Switch off the centrifuge.
Taking care of centrifuge:
ü  All the buckets of centrifuge should be well balanced.
ü  Never spill the liquids, salts etc on the centrifuge.
ü  While increasing the motion at first maintain 1000/rpm, 2000rpm, 3000rpm respectively.
ü  Never seal the mouth of centrifuge tube.
ü  Never try to stop the rotation of centrifuge with unnecessary force.
Distillation set/water distiller:
Veterinary laboratory requires the distilled water regularly for making different standard solution. Distilled water must be the source of the water. Other sources of water may contain different chemicals and minerals such as magnesium, sulphate, carbonates etc. The tests may not provide the accurate results if the source of water is not clean.
Fig: distillation set (source: www.wikipedia.org)
Principle:
The water is vaporized by keeping on a vat and cooled by keeping on condenser. Due to this the pure water only gets collected
Parts of distillation set:
ü  Water boiler
ü  Condenser
ü  Stand
ü  Pipe
ü  Water reservoir
ü  Heater
Procedure to use distillation set:
ü  At first place the water up to the half region of water boiler.
ü  Allow the water to pass from the condenser.
ü  When the water starts to exit from the condenser switch on the heater and heat the water. When the water starts to boil vaporization starts and the water reaches to the condenser. The tap water cools the condenser continuously. The vapor cools down and changes into water and get stored at reservoir.
ü  While stopping the distillation set at first switch off the heater.
ü  Then close the water supply.


Taking care of distillation set:
ü  Never place the large volume of water in the boiler, place nearly half part of the water in the boiler.
ü  Continuous water supply should be provided in the condenser. Otherwise the vapor goes out by vaporizing.
ü  Check the water supply whether it is continuous or not.
ü  Never place the dirty water on the boiler.
ü  The boiler should be cleaned regularly.
Water bath:
Introduction:
It is box shaped equipment made up of metal. It consists of double layer.  Both the inner and outer part of water bath is made up of steel. The upper part is open and can be closed with lid. This electrical equipment is insulated. Water can be heated for different chemical reactions in water bath. It consists of heating element which helps in heating the water. For the maintaince of water temperature thermostat is placed. On laboratory the water temperature is maintained on 56 and 37 ° Celsius. It consists of thermometer for measuring the temperature.
Fig: water bath (source: www.wikipedia.org)
Procedure to use:
ü  Distilled water should be placed on water bath.
ü  Switch on the water bath, maintain the temperature as required. Be careful whether the temperature increases or not.
Taking care of water bath:
ü  Only distilled water should be placed on water bath. If the water gets dirty new distilled water must be placed.
ü  Run the water bath only after placing the water inside it otherwise heating element may get destroyed.
ü  Add water if the water on water bath dries.
ü  Never mix any other materials on the water of water bath.
ü  Always close the lid of water bath.
ü  Switch off the water bath when the works get finished.
ü  While using the water bath at first the temperature should be maintained.
PH meter:
It is used for measuring the PH of solution on the lab. Different types of PH meter are available on the market. Some PH meter runs through battery while some runs with direct current. It consists of sensitive voltmeter. Ti measures the current influence of measuring electrode and reference electrode.
Fig: PH meter (source: www.wikipedia.org)
PH of solution:
All the solution contains the mixture of hydroxide ion and hydrogen ion. For example some solution contains the equal amount of hydroxide ion and hydrogen ion which is known as neutral solution.  Distilled water ionizes one molecule of hydrogen ion and one molecule of hydroxide ion. If the solution contains more amount of hydrogen ion it is called acidic solution and if the solution contains more amount of hydroxide ion it is called to be alkaline solution. The value of PH ranges from 0-14. If the PH values goes 6,5,4 it is acidic and if the PH increases from 7 and goes to 9,10 it is called alkaline solution.
Acidity
Neutrality
Alkalinity
1,2,3,4,5,6
7
8,9,10,11,12,13,14
The acidity and alkalinity of a solution can be measured by the help of PH value. If the solution contains low amount of hydrogen ion it contains more amount of hydroxide ion therefore the solution is alkaline. If there is low amount of hydroxide ion and more amount of hydrogen ion the solution is acidic.
PH can be measured by using the PH paper or PH meter.
PH value of some chemical solution and other solution
Solution
PH
0.1 mol. HCL
1
Lemon
2.3
Apple
3.0
Saliva
6.4
Milk
6.4
Urine
7.4
Sea water
8.2
Lime water
12.3
0.1 mol. NaOH
13
Measuring of PH:
ü  PH value is compared with the PH of a standard solution, which can be directly known from electric amplifier, digitally.
ü  The temperature of standard solution and the sample solution which PH is to be measured should be equal.
Calibration of PH meter:
Before using the PH meter it should be checked on the buffer solution containing the PH of 4, 7 and 9 .
Procedure to use PH meter:
ü  Switch on the PH meter.
ü  Electrode should be cleaned with distilled water and wiped with tissue paper
ü  Dip the electrode on PH 4 buffer solution and maintain the PH of 4. Clean the electrode with distilled water.
ü  Dip the electrode on PH 9 buffer solution and maintain the PH of 9. Clean the electrode with distilled water.
ü  Dip the electrode on the solution which PH is to be measured record the value of PH seen on PH meter.
ü  Clean the electrode with distilled water after measuring the PH of every solution.
ü  After the completion of measuring wash the electrode with distilled water or dip it on distilled water.
Taking care of PH meter:
ü  The electrode of PH meter should be dipped on water.
ü  Never measure the PH of extremely hot solution.
ü  Always keep the electrode of PH meter clean.
ü  While measuring the PH of different solution the electrode should be immediately cleaned after measuring the PH of one solution.
Colorimeter:
Colorimeter is equipment used in the biochemistry lab. Nowadays different types of colorimeter are available on the market. The main purpose of colorimeter is to measure the color present on the liquid. In biochemistry lab the amount of color produced while performing the reaction of   biochemical (glucose, urea, uric acid, bilirubin, etc) mineral (phosphorous, magnesium, calcium, and copper) with different reagents is measured. After performing the reaction high amount of color produced represents the high level of biochemicals and low amount of color represents the low level of biochemical. The advanced form of colorimeter is spectrophotometer.
Fig: colorimeter (source: www.wikipedia.org)
Principle:
The principle of colorimeter is based on Lambert’s law and Beer’s law
Parts of colorimeter:
ü  Electric source
ü  Light source
ü  Filter
ü  Cuvette holder
ü  Cuvette
ü  Photo cell
ü  Galvanometer
ü  Scale
Procedure to use colorimeter:
ü  Switch on the colorimeter 10-15 prior to use.
ü  Maintain the filter and wavelength according to need.
ü  Place the blank solution on cuvette and place it on covette holder. Maintain the OD on zero by adjusting the coarse and fine adjustment. Maintain the OD of blank solution to zero for 2 times.
ü  Remove the blank solution from cuvette and place the test solution and observe its OD. Similarly observe the OD of standard solution.
ü  Remove the solution from cuvette and clean it. Switch off the colorimeter.

Calculation:
Amount of solution= OD T/OD St *100
ü  OD= Optical Density
ü  St= Standard Solution
ü  T= Test
Taking care of colorimeter:
ü  Always connect voltage stabilizer with colorimeter.
ü  Never spill the water on colorimeter.
ü  Switch off the colorimeter after performing the test.
ü  Colorimeter should be placed/fixed on the area with absence of light.
ü  While not in use it should be covered with its cover
Weighing balances:
Weighing balance is the most important equipment of laboratory. While preparing the reagents, solutions, staining solution etc the chemical reagents should be measured on exact amount. Weighing balance on lab should be very sensitive and have the capacity to differentiate the weight of 0.01 gm (10mg).
Different types of weighing balances used on laboratories:
ü  Manually operated balance
ü  Electronic balance.
ü  Analytical balance.


Manually operated balance:
It contains pans on both sides. On the one side weight is placed and on the other side the sample to be measured is placed. Manually operated balances may contain 2 pans, one pan or may be of sliding type. This type of balance weighs up to 10 gm.

Electronic balance:
It runs with electricity. It is small, square, flat and box like in shape. It contains of a measurement to see whether it is on balance or not. The height of the measurement can be increased or decreased to balance the weighing balance. It consists of single pan and the weight is displayed digitally. It is expensive and can’t be used on the place where there is no electrical supply.
Fig: electronic balance (source: www.wikipedia.org)
Analytical balance:
It also runs through electricity and is used to measure the extremely smaller weight. It also consists of measurement of balance. It is affected by air also so it is kept inside the glass chamber. It consists of single pan and weight is displayed on digital screen. Extremely low weight can be measured.
Fig: digital analytical balance (source: www.wikipedia.org)
Taking care of weighing balance:
ü  While measuring the weight the samples should not be directly placed on pan. Plastic or paper pieces should be placed over pan before measuring the sample.
ü  It should be kept on strong surface which does not get destroyed easily.
ü  Equipments such as centrifuge, vortex should not be kept nearby balances. It may alter the weight.
ü  It should not be kept on sunlight and open area.
ü  Liquid solution, extremely cold samples should not be measured on balances.
ü  Always keep the pans clean
ü  Never weigh the samples more heavy than the capacity of the balance.
ü  If something spills over the balance clean it immediately.
ü  Before measuring the weight take care whether the pans are on balance or not.
ü  After completion of work the weighing balance should be kept covered by cleaning.





.


Unit: 2
General laboratory procedures
2.1 safety and first aid in laboratory
Lab technician is responsible for the safety and first aid on the laboratory. If the technician him/herself is not well known about the working procedures and the materials used on the lab then it becomes difficult to perform different types of tests. Lab technician must be well known about the different types of harmful specimens such as stool, urine, blood, biological etc. if the technician is not well known about these things there will be great risk of accident on the lab. If lab procedures are not followed properly there will be the great risk of injuries, diseases, fire etc. hence for preventing the possible risk of accidents, knowledge about the following things should be taken.
1.      Infective biological material
-          Specimen
-          Culture
-          Patient
2.      Dangerous chemicals
3.      Dangerous apparatus
-          Autoclave
-          Centrifuge
-          Sterilizer
-          Microtome and knife
-          Heater
-          Spirit lamp, Gas Bunsen burner
-          Oven
-          Glasswares
4.      Sharp needles
5.      Dangerous gases
-          Hydrogen
-          Carbondioxide
-          Formaldehyde
-          Chlorine
-          Ethylene oxide
-          Natural gases
6.      Fire
-          Electricity
-          Wiring
-          Overloading

7.      Protective garments
-          Laboratory coat
-          Apron
-          Gloves
-          Goggles
8.      Safety equipments
-          Fume cupboard
-          Eye wash
-          Emergency shower
-          Mask
-          Tong
-          Fire blanket
9.      Radiation
-          Ultra-violet light
-          Radioactive chemicals
10.  Personal behavior
-          Wearing of neck tie
-          Necklace
-          Bracelet
-          Long, open hairs
-          Long nails, nail biting
-          Untidiness
-          Hygiene
11.  Danger from animals on lab
-          Scratching, biting, kicking
-          Zoonotic diseases
12.  Disposing of
-          Infective materials
-          Chemicals
-          Carcass
13.  Storage
-          Poisonous chemical
-          Blood, serum, plasma
-          Antisera, antibiotics
14.  Security
-          No entrance without permission

Rules to be followed on lab

After getting the information on the following things, the lab technician should be careful for stopping the risk of accidents such as burns from chemicals, cut from sharp knives, cuts from broken glasses, transmission of diseases from infective specimen etc by being careful on following things.
ü  Wearing of lab-coat immediately after entering the lab
ü  All the chemicals used on the lab should be well labeled along with the date of manufacture and expiry date.
ü  All the equipments on the lab should be clean and dry.
ü  Managing and keeping the lab clean.
ü  Being careful while collecting and receiving the samples.
ü  Never put water on acid.
ü  Never eat on lab.
ü  Never suck the pipette with mouth.
ü  Never connect the naked wire on socket.
ü  Never touch the electrical equipments with wet hands.
ü  Never use the lab for other purpose such as gossiping, resting etc. lab should be only used for practical purpose.
ü  Always read the label and instructions before using the chemicals and storage should be done as instructed.
ü  Never use the chemicals without label.
ü  Never use the expired chemicals.
ü  Never smell the chemicals, bottles should never be carried by holding on its lid.
ü  Check the leakage of water, gas pipes regularly.
ü  First aid should be available on the lab.
ü  Never work on the lab with an assumption, if there is a doubt consult with senior technician or refer to the literature.
ü  Cover the body with clothes, wear shoes.
ü  Enough supply of water should be made available on lab.
ü  Broken glass and glasses with cracks should never be used. Dispose them properly.
ü  Never allow the entrance for children and animals on lab.
ü  Switch off the electrical supply and tap after the completion of work.
ü  If some accident occurs immediately inform the senior technician.
ü  After the completion of work infective specimen should be disposed by disinfecting on Lysol solution.



2.2 CLEANING OF GLASSWARES
Introduction:
Glass-wares need to be cleaned and sterilized even for those that have been not used or used. It is essential to clean and sterilize for killing or destroying micro-organisms and to prevent contamination.
Cleaning of new glass-wares:
New glass wares also require to be cleaned because there may be the resistant spores in the packing materials. It is not that the new glass-wares are ready for direct use due to dirt stains etc.
Materials required:
ü  5% HCL
ü  Autoclave
ü  Hot air oven
ü  Distilled water
ü  Wire bucket
Procedure:
ü  Dip new glass-wares in 5% HCL solution overnight.
ü  Place into a container having tap water and rinse at least for 2 times then rinse in warm distilled water.
ü  Place the glass-wares in wire basket and dry in hot air oven and use as required or after wrapping in craft paper which can be autoclaved.

cleaning of used glass-wares:
ü  After using glass-wares must be dipped immediately in water.
ü  Dip in 3% Lysol or 1% sodium hypo-chloride solution for overnight.
ü  Rinse the glass-wares in tap water properly.
ü  Dip the glassware in 5% soapy solution. (detergent water) for 1 hour.
ü  Using brush scrub each glass-wares and place in container containing clean water.
ü  Wash in tap water to remove soap.
ü  Wash in warm water.
ü  Ultimately rinse in distilled water.
ü  Then dry at 100ºc and use the dried glass-wares as required or sterilize in hot air oven at 160°c for 1 hour.

2.3 Sterilization:
Sterilization is the process of destruction of all forms of micro-organisms. An instrument is considered sterilized when it is free from living micro-organisms. The very word sterile, sterilize and sterilization in microbiological stand point indicate total absence or killing of all micro-organisms.
Sterilization is most commonly done through heat. Heats are divided into two groups moist heat and dry heat.
A.    Moist heat
a.       Autoclave: moist heat in the form of saturated steam under pressure is the most practical method for sterilization. The laboratory apparatus used with stem under regulated pressure is called autoclave. Both pressure and temperature for a definite period of time kills the organisms. Autoclave is an essential instrument in every diagnostic microbiological laboratory. Cotton, wools, various cultural media, solutions are sterilized with the instrument. In autoclave most of the materials are sterilized under 15 lb pressure at 121 ° Celsius temperature.
b.      Tyndallization: tyndallization is also a process of moist heat application. Some materials like amino acids, sugar solutions etc are required to be heated at 90-100 ° Celsius temperature on three successive days with interval in between. During the interval or incubation period resistant spore germinate and on subsequent exposure to heat the vegetative stage get destroyed. This method of heating at successive heating is called fractional sterilization or tyndallization.
c.       Boiling: through boiling it is possible to destroy most of the vegetative forms of the micro-organisms, but spores cannot be destroyed with this method. Boiling water can be considered as a true method of sterilization. In field condition surgical instruments are frequently put under boiling water. Through this method instrument can be brought under disinfection but not to the extent of sterilization.
d.      Pasteurization: pasteurization is a process by which food and food products (milk,fruits, juices, wine etc) are protected from putrefaction and fermentation. It involves a short exposure to heat at a lower temperature than that employed in ordinary sterilization. In this process, the product is subjected to a controlled heat treatment which kills micro-organisms of certain types but not all. Millk is commonly pasteurized then marketed. The temperature selected for pasteurization is based on a thermal death time of most resistant type of micro organisms to be destroyed by this process.
Two methods of pasteurization are used commercially low temperature holding method (LTH) and high temperature short time method (HTST). In LTH method milk is exposed to 62.8 ° Celsius for 30 minutes and in case of HTST method milk is exposed to a temperature of 71.1 ° Celsius for 15 seconds.

B.     DRY HEAT:
It is done by the following.
i.                    Red hot: inoculating wire, foreceps, spatula etc are sterilized at the blue zone of the Bunsen burner up to heated red hot.
ii.                  Flaming: scalpel, needle, cultural tube, cotton wool plug, glass slide etc are sterilized by passing the articles through Bunsen flame without allowing becoming red hot.
iii.                Hot air oven: here heating is done by electricity above chosen temperature which is maintained by thermostat. Here sterilization is done at 160 ° Celsius for 1 hour. Materials to be sterilized through this are all glasswares, surgical instruments, glass syringe etc.  Should be taken before sterilization by this method are.
a.       All glass articles must be wrapped with craft paper.
b.      All articles must be free from moisture.
c.       After the switch is put off, the whole system is allowed to be cool.
Dry materials in sealed container with petroleum jelly that are impermeable to microbes can be sterilized by this method.

2.4 Antiseptics:
 It is an agent that prevents sepsis i.e. prevents the growth of infective agents like bacteria, virus, protozoa etc. these substances are substantially non-toxic for superficial application to living tissues. Therefore these agents can be applied externally on animals to kill or prevent the growth of microbial population. The antiseptics belong to a variety of chemical substances e.g alcohol, phenol, variety of metallic salt, acridine dyes etc. they are used on the intact skin before surgical operation and injection. They are applied to broken skin following wounds, burns etc. they are also used on mucous membrane e.g conjunctiva or bladder to prevent or treat the superficial infection.
They are grouped as
a.       Oxidizing agentse.g hydrogen peroxide (H2O2), potassium permagnet (KMNO4), chlorine, iodine, iodophore etc.
b.      Reducing agents e.g. sulphur dioxide and formaldehyde.
c.       Metallic compounds e.g mercuric chloride and iodide.
d.      Acids and alkalis eg boric acid and various sodas etc.
e.       Alcohol -70% ethyl alcohol
f.       Phenol and cresol.
g.      Various dyes- acriflavin, brilliant green, proflavin.
h.      Detergents- various soap
i.        Cetrimides.
j.        Quaternary ammonium compound.
k.      Antimicrobial agents- they include various antibiotics and chemotherapeutics. They are called as therapeutic agents.
2.5Disinfectants:
Disinfectants are agents which are too toxic to be applied to the tissues of the host but which can be used in destroying contaminating inanimate objects eg. Drains, faecal matter, building, vehicles, cooking materials, surgical instruments and apparatus and the rooms or sheds
Qualities of disinfectants:
a.       The price of it must be affordable. The requirement of it is in bulk quantity. Therefore the price is one of the important attributes to a farmer.
b.      The disinfectants should not emit disaggreable offensive odor. This is relevanat in case of the dairy animals. Since this odour may taint the milk rendeing milk unacceptable to the consumer.
c.       It should not be harmful to the tissues or materials upon which it is applied. It must have bactericidal property.
d.      Its action should not be such strong when applied to the house or premises that the life of the animals is at risk. While they lick or drink water from such surface or pasture.
e.       While it combines to any chemicals it should not become inert especially when used to disinfect utensils, or blood.
f.       The irritating property should be in permissive level. It should not be too much irritating to the mucous membrane lining the respiratory tract causing damage and inflammation. High concentration of formaldehyde, chlorine gas may be too irritating to the mucosa.
g.      There must not be reduction of disinfecting quality to an appreciable level when used in extreme hot or cold weather. But, it should preserve all its disinfecting quality in ordinary temperature.
h.      It must be able to act even when diluted with water to a considerable extent.
i.        It must mix well with water so that it remains uniform when applied following dilution with water.
2.7  Collection, storage, labelling and dispatch of samples to laboratories
For the diagnosis of disease, different type of samples from different parts of the body of the animal must be collected. After collecting the sample, the samples should be stored at appropriate media before sending it to the lab for examination. While sending the samples to the lab following information must be provided for the diagnosis of different type of diseases.
Sample no:                                                                                 collection date:
Name of the owner:
Address:
Species of animal:                         breed of animal:                    age of animal:
Sex of animal:                                tag of the animal:
Brief information about the suspected disease:
Chemicals used to preserve the samples:
Contact no of the owner:
Disease/Condition
Sample type
1.      Vitamin deficiency
Feed
2.      Minerals deficiency
Serum
3.      ketosis
Urine
4.      iron deficiency
Blood
5.      F.M.D
Exudates from the wounds of mouth, tongue, feet, scraps from the wound, serum
6.      Pox
Nodules, serum
7.      Rabies
Tissues from central nervous system
8.      Ranikhet disease
Central nervous system, serum, tissue sample, liver and spleen should be sent by preserving on 50% glycerine.
9.      Marex disease
Feathers, serum, tissue sample
10.  Leukosis
Tumors, tissue sample
11.  Gumboro
Serum, bursa, kidney, tissue sample
12.  Leptospirosis
Serum, blood, urine and tissue sample
13.  Anthrax
Blood smear, blood from ear vein by mixing with anticoagulent
14.  Tetanus
Blood smear, swab from the wounds
15.  Black quarter
Blood smear, swab from the inflamed area
16.  Enterotoxaemia
Intestinal parts
17.  Brucellosis
Gastric contents of aborted fetus, serum from infected animal
18.  Actinobacillosis
Swab from wounds, blood smear
19.  Haemorrhagicsepticaemia
Blood smear, nasal swabs, tissue sample
20.  Actinomycosis
Swab of exudates, pus and tissue sample
21.  Chronic respiratory disease
Nasal swab, tissue sample
22.  Coryza
Nasal swab, tissue sample
23.  Aflatoxin
Feed sample
24.  Coccidiosis
Samples from intestine and caecum
25.  Theileriosis
Blood and lymph node’s smears
26.  Anaplasmosis
Blood smear
27.  Internal parasites
Fecal samples
28.  Poison
Gastric contents, blood, serum
29.  Skin diseases
Skin scrapping
30.  Fowl cholera
Blood smear, blood swab should be sent on charcoal media
31.  Fowl typhoid
Liver should be sent by preserving on formalin
32.  Pullorum
Dead chicks

Dispatch of the samples to laboratories:
Collected samples should be dispatch to the lab for the diagnosis of bacterial, viral and fungal diseases. Similarly the isolated bacteria from the cultures should be sent to the reference labs for examination.
While sending samples to the lab, information about the samples, sample size, information about the animals, general information about the symptoms, and information about the sample collector, address of the sample collector should also be included. The collected samples should be sent to the lab within 10-24 hours. If it is not possible to send the samples to the lab immediately, the collected samples should be preserved on the refrigerator at 40but should not be kept at deep fridge. While sending the sample to bacteriological lab the sample should be preserved at on cooked meat media. While sending the samples to virological lab, the samples should be kept on virus transport medias. The samples should be well labeled and kept on icepack or thermocool vials. “SAMPLE HANDLE WITH CARE” should be written on the external part of the sample containing vials. 

Unit: 3.
Parasitology
3.1 Common internal parasites of livestock and poultry
The common internal parasites of livestock and poultry are helminthes. Helminthes can be further classified as following.
1.      Nematodes (round worms)
Ascaris, Strongylus, Trichuris, Cooperia, Bunostomum, Tricostrongylus, Esophagustomumetc
2.      Trematodes (flat worms)
Liverfluke/Fasciola, Paramphistomeetc
3.      Cestodes (tape worms)
Monezia, Taenia, Echinococcusetc

3.2  Fecal sample collection:
5-10 GM of fecal sample can be directly collected from the rectum of the animal. The samples may also be collected from the middle part of the excreted feces. Samples should be kept on the clean and dry vials. In case of small animals fecal samples can be collected from the rectum with the help of fingers. The samples should be preserved on ice if there is delay on dispatch. Samples can be also preserved by adding 2-4 drops of 10% formalin solution. Sample can also be stored at 4°C on refrigerator. Addition of chemical should not be done on the suspected samples of lung worm. Consistency of fecal sample should be observed on lab and following conditions should be included on the report.
ü  Solid, semi-solid, watery or rice gruel etc
ü  Presence/absence of the white segments of the tape worm should also be included on the report.
Shape and color of feces of different animals
species
Shape of feces
Color of feces
1.      Cattle/Buffalo
Cake like
Dark brown to dark green
2.      Sheep/Goat
Pellet
Yellowish brown to black
3.      Pig
cylindrical
Dark yellow
4.      Horse/Mule
Bolus
Yellowish brown to dark green
5.      Dog,Cat
Cylindrical
Yellowish brown





3.3  Fecal sample examination methods
Microscopic fecal examination methods
1.      Direct smear method
2.      Floatation method
a.      Saturated sodium chloride solution method
b.      Saturated sugar solution/zinc sulphate solution method
3.      Sedimentation method
1.      Direct smear method:
ü  1 drop of normal saline is placed on a clean glass slide.
ü  With the help of spatula, small amount of feces is kept on the slide with normal saline.
ü  Mix well the normal saline and feces and make a thin smear.
ü  Cover the smear with cover slip and examine under 10 x at first and then at 40 x objective lens.
ü  In place of normal saline lugol’s iodine may also be used. Lugol’s iodine is quite helpful to detect the larva of third stage and protozoa.
2.      Floatation method:
a.      Saturated sodium chloride solution method:
ü  At first 3 GM of feces is measured and mixed with 42 ml of water and sieved.
ü  15 ml of the sieved solution is kept on centrifuge tube with round bottom.
ü   Centrifuge tube is centrifuged on 1000 RPM for 5 minutes.
ü  The clear upper part of the solution is removed after centrifuge is completed, centrifuge tube is filled with the solution of sodium chloride and the mouth of centrifuge tube is sealed with cello tape.
ü   Centrifuge tube is again centrifuged for 5 minutes on 1000 RPM. Cello tape is kept under the microscopic field and observed under10 x objective lens.
b.      Saturated sugar solution/zinc sulphate solution method:
ü  At first 3 GM of feces is measured and mixed with 42 ml of water and sieved.
ü  15 ml of solution is kept on centrifuge tube and centrifuged on 1000 RPM for 5 minutes.
ü  The clear upper part of the solution is removed after centrifuge is completed, centrifuge tube is filled with the solution ofsaturated sugar or zinc sulphate and the mouth of centrifuge tube is sealed with cello tape or cover slip.
ü  Let the solution inside tube touch the cello tape or cover slip.
ü  Examine the cello tape or cover slip under microscope.
3.      Sedimentation method:
ü  Prepare the solution of feces similarly as done in flotation method.
ü  Keep the solution on a clean beaker and let it to sediment, leave it for 15-30 minutes and remove the upper part of the solution.
ü  Fill the beaker with water.
ü  Continue the process for 3 times.
ü  Again fill the beaker with water.
ü  Remove the upper portion of water and keep 2 ml of sediment on the beaker.
ü  Add 3-4 drops of methylene blue on the beaker containing the sediment.
ü  Keep 1-2 drops of the sediment on the glass slide.
ü  Cover it with cover slip.
ü  Observe it under 5x, 10x objective lens
3.4  Common external parasites of livestock and poultry:
The common external parasites of livestock and poultry are mange/mites. Mites cause mange on the animal’s body. It can occur on every species of animals. It is a kind of micro-organism. Different types of mites effect different species of animals. Identification of mites can only be done with their body structures.
1.      Sarcoptic mange:
This type of mange contains pus. The mites causing this type of mange reside deep inside the skin. It contains small, undeveloped legs. It contains suckers on pedical.
2.      Corioptic mange:
This type of mange is mostly found in cattle and buffalo. This type of appears on the base of the tail and spreads throughout the body. This type of mites contains suckers on small pedicles. The posterior lobe of male is large and contains hairs.
3.      Demodectic mange:
This type of mange is seen on cattle, buffalo, dog, sheep and goats. Adult animals are mostly affected by this type of mange.
4.      Psoroptic mange:
Although this mange does not reside on the depth of the skin but also it affects on wool production of sheep.

3.5 Skin scrapping test
ü  At first the skin samples from the animals suffering from mites should be collected.
ü  While collecting the samples the infected part should be lubricated with Vaseline.
ü  After that the infected parts should be scrubbed with clean scalpel blade until the blood oozes out.
ü  The skin samples should be kept on a clean piece of paper or petri dish.
ü  After taking the sample to lab, it should be kept on test tube.
ü  Samples should be mixed with 5 ml of 10% potassium hydroxide or sodium hydroxide on test tube.
ü  The test tube should be heated on water bath so that the hairs and skin gets digested.
ü  Let the test tube to cool down.
ü  When the test tube cools, centrifuge it at 1500 RPM for 5 minutes.
ü  Discard the upper portion of solution.
ü  Place 1-2 drops of the sediment on clean glass slide, observe it under microscope.









4.1 Types of blood cells
Animal blood
Fig: shape wise classification of blood cells (source: www.wikipedia.org)
Blood may be termed as a specialized and circulating tissue composed of cells suspended in a fluid intercellular substance which circulates through a closed system of blood vessels (arteries, veins) due to pumping action of the heart. If the blood is centrifuged it separates into two distinct fractions, the upper fraction is clear straw-colored fluid called plasma while less than half of the tube is packed with the so called formed elements, consisting of red blood cells, white blood cells and platelets. When the blood is allowed to clot a colorless fluid portion oozes out. This is serum. It differs from plasma in that the fibrinogen portion is not present in the fluid portion of the serum.
Blood:
 


                     RBC                                           WBC                                         PLATELETS
RBC:  erythrocytes constitute about 32% of the total amount of the blood. While viewing under the microscope they appear as biconcave discs, circular in shape, flexible and possess no nucleus,having lost it before entering the circulation. It may be noted that the RBC of birds including chickens, ducks, turkeys etc, fish and reptiles including any of a group of cold blooded vertebrates that crawl their bellies, possesses a nucleus, while those of camel erythrocytes are oval in outline and biconvex.
WBC:
WBC can be further classified under
1.      Granulocytes:  Granulocytes contain granule within the cytoplasm that stain with common blood stain. Nuclei appear in many shapes. 
Neutrophils: the group constitutes the greatest number of all the WBCs. Their number increases rapidly whenever acute infection is present.
Eosinophils: granulocyte type that stains with eosin is known as eosinophil. May be weakly phagocytic. Primary function seems to be the detoxification of either foreign proteins introduced into the body.
Basophils: contain blue staining granules, are also rare in normal blood.

2.      Agranulocytes: Agranulocytes usually show few granules.
Monocyte: the largest WBC, like neutrophils, are phagocytic. They are functional more for cases of less acute infections.
Lymphocyte: variable in size and appearance. One of the major functions is their response to antigens (foreign substances) by forming antibodies that circulates in the blood or in the development of cellular immunity.
Platelets: also called thrombocytes, are a component of blood whose function (along with the coagulation factors is to stop bleeding by clumping and clotting blood vessel injuries.Platelets have no cell nucleus they are fragments of cytoplasm that are derived from the megakaryocytes of the bone marrow, and then enter the circulation. These unactivated platelets are biconvex discoid (lens-shaped) structures 2–3 Âµm in greatest diameter. Platelets are found only in mammals, whereas in other animals (e.g. birds, amphibians) thrombocytes circulate as intact mononuclear cells.
On a stained blood smear, platelets appear as dark purple spots, about 20% the diameter of red blood cells. The smear is used to examine platelets for size, shape, qualitative number, and clumping. The ratio of platelets to red blood cells in a healthy adult is 1:10 to 1:20.

The functions of blood:
1.      Blood carries nutrients made available by the digestive tract to body tissues.
2.      It carries oxygen from the lungs to the tissues.
3.      It carries carbon dioxide from tissues to the lungs.
4.      Waste products from various tissues are carried to the kidneys for excretion.
5.      Hormones are carried from endocrine glands to other organs of the body.
6.      Blood plays an important role in temperature control by transporting heat from deeper structures to the surface of the body.
7.      Water balance is maintained by the blood.
8.      Buffers such as sodium bicarbonate in the blood help to maintain a constant PH of tissues and body fluids.
9.      The clotting ability of blood prevents excess loss of blood from injuries.
10.  Blood contains important factors for defense of the body against disease.

4.2 Blood sample collection methods:
Site of blood collection differs from one species to another. Before collecting the blood the animal should be restrained properly. The animals should not be allowed to move. Prior to collection of blood the area around the vein should be made free of hairs with the help of scissors or blade. After that application of spirit should be done. Application of spirit makes easy to locate the vein. In case of cattle before the collection of blood the jugular vein should be raised by pressing on jugular furrow. Now fit the needle on the new vacutainer holder. Pierce the vein with needle. Now draw the blood from the vein slowly.
Different types of vacutainer for blood collection
ü  for preparation of serum vacutainer without anticoagulant (having red cap)
ü  for hematological tests vacutainer with anticoagulant EDTA (having violet cap)
ü  for biochemical examination vacutainer tube with heparin (having green cap)

Animal species
Blood collection site
Needle size(gauge)
Horse
Jugular vein
18-19 gauge
Cattle and buffalo
Jugular vein
18-19 gauge
Sheep and goat
Jugular vein
20 gauge
Swine
Ear vein or anterior venacava
20 gauge
Poultry
Wing vein or jugular vein
21-22 gauge
Dog
Cephalic or cephanous vein
20-22 gauge
Cat
Cephalic or cephanous vein
20-22 gauge
Rabbit
Ear vein
22-23 gauge
Mice
Orbital sinus
Microhematocrit tube

4.3 Total count of RBC
Materials required
ü  Neubauer’s slide counting chamber along with cover slip.
ü  RBC diluting pipette (with red grain)
ü  RBC diluting fluid (Haems fluid) or (Decies fluid)
ü  Watch glass or small Petridish
ü  Microscope
Fig: neubauer’s slide (source: www.wikiwand.com)
Fig: neubauer’scounting chamber (source: www.wikipedia.org)
Procedure for counting RBC
ü  Clean the counting chamber and cover slip with soft tissue paper and cover the rule part of neubauers chamber with cover slip.
ü  Transfer the diluting fluid on watch glass or Petridish
ü  Mix well the blood on blood vial
ü  Suck the blood up to 0.5 mark of RBC diluting pipette. Clean the tip of the pipette with cotton.
ü  Suck the diluting fluid up to 101 mark of the diluting pipette.
ü  Mix well the blood and diluting fluid inside the diluting pipette by keeping it on the palm.
ü  Discard 2-3 drops of solution.
ü  Keep 1 drop of the mixed solution on the side of the cover slip (charging)
ü  The fluid get well throughout the counting area of neubauers chamber.
ü  If air bubbles are formed remove the counting chamber and cover slip and repeat the same process again.
ü  Leave the solution for 2 minutes.
ü  At first observe the diluted blood on 10x on microscope and after that observe on 40x.
ü  Count the RBC present on 5 medium squares (4 of 4 corners and one on the middle)
ü  While counting the RBC touching the right side and down side should not be counted.
ü  Total RBC counted should be multiplied by 10000 and is expressed on cubic ml.
CALCULATION
R= total RBC counted on 5 secondary square chamber
Total RBC present on 1 cu mm or 1 microlitre of blood= R*10,000

4.4 Total count of WBC
Materials required:
ü  WBC diluting pipette (containing white grain inside)
ü  Counting chamber/ neubauers chamber
ü  Cover slip
ü  Microscope
ü  WBC diluting fluid
Procedure for counting WBC
ü  Cover the rule part of counting chamber with cover slip.
ü  Mix the blood with anticoagulant properly and suck the blood up to 0.5 mark of WBC diluting pipette.
ü  Discard the extra blood above 0.5 mark
ü  Suck WBC diluting fluid up to 11 marks.
ü  Mix well the blood and WBC diluting fluid by keeping the WBC diluting pipette within 2 palms.
ü  Discard 2-3 drops of fluid and place one small drop of fluid at the edge of cover slip and let the fluid to spread throughout the rule area and leave it for 1 minute.
ü  With the help of microscope observe it under 10 x power. The condenser of microscope should be kept down so that the cells can be seen clearly.
ü  Count the WBC on 4 large squares present on 4 corners while counting WBC never count the WBC on the down and right side.
Calculation
W= total number of WBC counted on 4 large squares.
WBC present on 1 cu mm or 1 microlitre blood = W*50
4.5  Differential count of WBC:
Before performing the differential leukocyte count, a thin smear of blood should be made on glass slide. The smear should be thin, leveled and should not contain any bubbles.
ü  Let the smear dry on air.
ü  Number the smear for identification
ü  Fix the smear by dipping on methanol solution for 5 minutes.
ü  Dip the smear on the giemsastain solution of 1:10 (1 part of giemsa stain mixed with 10 parts of water) for 30 minutes.
ü  Now wash the slide with tap water let it dry.
ü  Observe under oil immersion lens (100x)
ü  Count at least 100 blood cells.
ü  The different type of cells visible by this process is eosinophils, basophils, neutrophils, monocytes, lymphocytes.
ü  The number of cells is denoted in percentage.
Interpretation:
33.  Lymphocytosis: increased number of lymphocytes in blood is known as lymphocytosis. Lymphocytosis is seen during viral infection, tuberculosis, brucellosis, hypothyroidism, following vaccination, leukemia, adrenocorticainsufficieny etc.
34.  Lymphopenia: decreased number of lymphocytes in blood is known as lymphopenia. Lymphopenia is seen during canine distemper, infectious canine hepatitis, corticosteroid therapy, hypothyroidism, coxiellaburnetti infection, F.M.D, mucosal disease etc.
35.  Neutrophilia: increased number of neutrophils in blood is known as neutrophilia. Neutrophilia is seen during septicaemic disease, uremia, gout, coronary thrombosis, pyogenic infection, acute inflammation, cancer, arthritis, pyometra, post-surgical operation, pregnancy, calf diphtheria, rheumatic fever etc. the condition in which the immature neutrophils are present in blood is known as shift to left.
36.  Neutropenia: the condition in which the number of neutrophils decreases is known as neutropenia. Neutropenia is seen during the infection of diseases such as pasteurellosis, bovine viral diarrhea, infectious canine hepatitis etc.
37.  Eosinophila: increased number of eosinophil is known as eosinophilia. Eosinophilia is seen during parasitic infection, skin diseases, anaphylactic reaction etc.
38.  Basophilia: the condition in which the number of basophils increases in blood is known as basophila. Basophilia is seen during pox, sinusitis, cirrhosis etc.
39.  Monocytosis: increased number of monocytosis in blood is known as monocytosis. Monocytosis is seen during brucellosis, tuberculosis, carbon tetra chloride poisoning etc.


4.6 Collection of blood serum
ü  For the collection of serum the blood should be collected on the vacutainer with red cover. The tube should be Kept on the room temperature for 1-2 hours on inclined position. The blood should clot. After the blood clots the tube should be kept on the refrigerator overnight for clot retraction which makes easier for the collection of serum.
ü  On the next day the tube should be taken out from the refrigerator. With the help Pasteur pipette the serum should be transferred to the serum vial.
ü  The tube should be centrifuged for the further collection of serum. The colour of serum is slightly yellow.
ü  The vials containing serum should be kept on refrigerator. For longer storage period the serum may be stored on dip fridge.














4.7Hemoglobin estimation:
Pic: sahli’shemoglobinometer (source: www.wikipedia.org)
a.       Sahli’shemoglobinometer: N/10 hydrochloric acid is put in the hemoglobinometer up to the mark 20 below. Draw fresh or oxalated blood up to 20 c mm. mark of the hemoglobinometer pipette. Immediately mix it with N/10 hydrochloric acid of the hemoglobinometer. Mix it properly and allow it to stand in the comparator for 10 minutes for the conversion of hemoglobin to acid haematin. Now add distilled water drop by drop with the help of dropper and mix with stirring rod till the color matches well the fixed colour in the comparator. The mark tallying with the upper level of diluted acid haematin denotes the level of hemoglobin. This is expressed in terms g per 100 ml of blood.

Normal level of hemoglobin in different animals
Animal
Hemoglobin level (g/100ml)
Cattle
11.3
buffalo
12.9
horse
11.5
goat
10.9
sheep
14.4
pig
11.0
Dog
13.0
cat
12.0
Diminished level is observed in case of anaemia. Increased level is observed in case of polycythaemia and haemoconcentration.




Unit: 5
Urology
5.1 urine sample collection
While collecting the urine sample, if the animal is urinating the middle stream of the urine should be collected, if the animal is not urinating we can give pressure on urinary bladder to make it urine forcefully. We can also use catheter to collect the urine.
5.2 general properties of urine
We cannot store urine at room temperature for a long interval of time because the physical and chemical properties of urine may alter. If there is the presence of bacteria in urine their number may rise dramatically. If the bacteria is capable to breakdown the urea PH of urine may rise. If the urine is alkaline the cast cells may dissolve and may not be visible while analyzing the urine so fresh urine at morning time should be collected and analyzed.
5.3  Routine examination of urine 
Examination of urine can be classified according to
1.      Physical examination
2.      Chemical examination
3.      Microscopic examination
1.      Physical examination: on the basis of physical examination, volume of urine, color, smell, reaction, PH, specific gravity and transparency are examined
·         Volume: Volume of urine is influenced by various factors such as; physical condition of animal, water intake, environmental factors, temperature, feed etc. volume of urine of different animals are as follows.

Species of animal
Volume of urine/day in litre
1.      Horse,mule
2-11           (Average 4.7)
2.      Cattle/buffalo
8.8-22.6    (Average 14.2)
3.      Sheep/goat
0.5-2          (Average 14.2)
4.      dog
0.5-2          (Average 14.2)
5.      pig
2-6             (Average 14.2)

·         Color:
Yellow color of urine is due to presence of urochrome. Higher the urochrome concentration the color of urine becomes dark yellow and lower the urochrome concentration the color of urine becomes faint yellow.  Most yellow color is suspected due to diabetes, pyometra, jaundice or kidney malfunctions. Color of urine is also related to specific gravity and volume of urine.
Various color of urine is detected in laboratory. The common color of urine are listed below
ü  colorless
ü  yellow
ü  dark yellow
ü  pale yellow
ü  yellowish brown
ü  greenish yellow
ü  greenish
ü  red and milky color
-          Dark yellow color is seen in acute nephritis, dehydration and fever.
-          Coffee color is seen in case of babesiosis, hypo-phosphotaemia
-          Red color is seen due to presence of hemoglobin, phenothiazine, phenophtalin, azusulamide etc.
-          Milky white is due to presence of pus and fat in urine.
-          Green color is seen due to degradation of urine sample, phenol poisoning and intravenous application of methylene blue.
-          Orange color of urine is seen in the case of jaundice where urobilinogen is present.
·         Smell/Odor:
ü  Normally urine is light aromatic.
ü  Pungent odor is received due to the presence of ammonia forming bacteria.
ü  Putrid sample of urine is received in the case of urinary system infection.
ü  Fruit smell in urine is received in the case of ketosis.
·         PH:
ü  Urine PH helps to understand the condition of kidneys. PH is analyzed by using litmus paper, PH meter and reagent strip. If the blue litmus paper turns red the urine is acidic and if it turns blue the urine sample is alkaline. PH of urine differs according to animal species, feed and water supplement. PH of herbivorous animals is alkaline whereas carnivorous animal is acidic.
Species
PH value
Horse
 Alkaline 8.0
Cattle/Buffalo
Alkaline (7.4-8.4)
Sheep/Goat
Alkaline (7.2-8.4)
Pig
Alkaline or Acidic depends upon the feed intake
Dog
Acidic( 6-7)
Man
Acidic (4.6-7) Average 6

·         Specific gravity:
Specific gravity is detected to know the filtration capacity of kidney. Specific gravity is analyzed by using urinometer, refractometer and reagent strip.
Species of animals
Specific gravity
Average
Horse
1.20-1.050
1.035
Cattle/Buffalo
1.015-1.045
1.035
Sheep/Goat
1.015-1.050
1.030
Dog/Cat
1.020-1.045
1.025
pig
1.005-1.025
1.015


·         Transparency:
-          Cattle and buffalo: Normally in the case of cattle and buffalo fresh urine is clear and transparent.
-          The urine of horse is thick and cloudy due to the presence of calcium carbonate.
2.      Chemical examination of urine:
The chemical examination of urine is done to detect the presence of protein,glucose,ketone, bile, blood etc in urine.
·         Protein test:normally the urine does not contain protein. Protein in urine is seen during, contraction of muscles, consumption of diet rich in protein,emotional stress, kidney’s failure and fever
Protein test can be done by:
a.      Heat and acetic acid test method
b.      Robert’s test
c.       Sulfosalicylic acid test
d.      Reagent strip test
a.       Heat and acetic acid test method:
ü  Add 2/3 part of urine on 5 ml test tube.
ü  If the urine sample is alkaline, add some drops of 10% glacial acetic acid and make the urine acidic.
ü  Heat the upper part of the test tube.
ü  Add some drops of 10% acetic acid on urine sample. If the urine gains cloudy color we can understand that the urine sample contains protein, if the urine shows no change in color absence of protein can be understood.
ü  In this method protein and phosphate can be examined.
b.      Robert’s test:
ü  In this method ,concentrated acid helps to coagulate the urinary protein, as a result the presence or absence of protein in the urine can be detected.
ü  Place 2 ml of robert’s reagent on a clean test tube.
ü  Add 2 ml of urine sample (drop by drop) with the help of pipette by touching on the wall of test tube. (if the urine sample is cloudy, it should be centrifuged before performing the test)
ü  A ring is formed on the area of mixing of urine and reagent, if the urine contains protein (albumin) if the urine does not contain protein the ring will not form.
c.       Sulfosalicylic acid test method:
ü  It is a trusted method to detect the presence of protein in urine.
ü  If the urine is alkaline add some acid to the urine and make acidic.
ü  Keep  2 ml of urine sample in a test tube ,add 4-5 drops of 20% sulfosalicylic acid on the test tube with urine sample.
ü  Heat the test tube, if the urine becomes turbid the sample is declared to be protein positive.
d.      Reagent strip method:
Protein in urine can also be detected with the help of multistik, combistiketc
·         Glucose test:
Normally urine does not contain glucose. In case of cattle/ buffalo, there is less importance of sugar test. Sugar test has great importance in case of dog. Glucose is seen in urine in the case of diabetes. To detect the glucose in urine Benedict’s test is quiet helpful.
Benedict’s test:
ü  Benedict’s reagent is easily available at market
ü  Keep 5 ml of benedict’s reagent on test tube.
ü  Add 0.5 ml of urine sample on the test tube and heat the solution for 2 minutes on Bunsen burner or spirit lamp.
ü  Be careful that the solution my spill out from the test tube while burning on Bunsen burner.
ü  Let the test tube to cool, tally the colour obtained by the solution with the chart provided on the reagent bottle.
·         Ketone test:
Normally the urine of cattle/buffalo does not contains ketone bodies. Ketone body is composed of acetoacitic acid (20%), acetone(2%) and betahydroxy butyric acid (78%). Ketosis is the diseases caused by the alteration of fat metabolism due to which ketone bodies are present in urine. This disease is mainly seen on lactating cattle/buffaloes. To detect the ketone bodies rothera’s test is quiet helpful.

Rothera’s test:
ü  Keep 4 mg of rothera’s reagent on a clean dry test tube.
ü  Add some urine to dissolve the reagent powder.
ü  Observe it after 1 minute.
ü  If the reagent color change into purple color then the presence of ketone bodies in urine is declared.
·         Bile salt
The biles present on urine are urobilinogen, bile salt and bile pigments. Bile pigment is present on the urine while there is malfunctioning of the liver. Bile salt can be tested by following way.
Gmelin’s test:
ü  Take 2 ml of urine sample on clean, dry test tube.
ü  Add 2 ml of concentrated nitric acid on the urine sample.
ü  If the samples contain bile salt, it changes into greenish blue color.
ü  Bile salt is present in urine during obstructive jaundice.
·         Blood:
ü  Keep 2 ml of urine on a test tube.
ü  Add 2 ml of benzidine saturated solution.
ü  Mix 1 ml of fresh hydrogen peroxide.
ü  If the urine contains blood, it changes into blue or green color.
Presence of blood in urine is known as hematuria, presence of hemoglobin in urine is known as hemoglobin urea.
3.      Microscopic examination of urine:
Sediment of the urine is used to examine the microscopic examination. In microscope epithelial cell, pus cell, crystal, erythrocyte etc can be examined. Spermatozoa , parasites, fungus and tumor cells can also be examined by this method.







Unit: 6
Microbiology
6.1 preparations of media
For the growth of the bacteria different types of media should be prepared on the lab.
Most of the Medias are found prepared in market
1.      Nutrient broth: weight the required amount of the media dissolve it with mild heat, after the media gets dissolved keep it on test tube or bottle and seal it. Keep it on autoclave and maintain the temperature of 121 ° C for 15-20 minutes. After that take the media out and refrigerate it at 2-8 ° C.
2.      Nutrient agar: weigh the required amount of the media and dissolve it with the help of mild heat, maintain the PH of 7.4 and autoclave it at 121 °C for 15-20 minutes. After it gets cooled Keep about 20 ml of media on sterilized Petri Dish and cover it. Leave the media for about 15-20 minutes on room temperature and let it to fix. It can be stored for several months at the temperature of 2-8 ° C.
3.      MacConkey’s agar:  while performing the culture, lactose fermenting bacteria produce pink colony on macConkey’s agar whereas non lactose fermenting bacteria show no change in color. Required amount of media is weighed and autoclaved. About 20 ml of media is taken out from autoclave and kept on Petri Dish and covered. Media can be prepared on sterilized tube or vial.
4.      Blood agar: This is red colored and mostly used for the growth of gram positive lactose fermenting bacteria. Hemolysis is seen during bacterial growth on blood agar. Required amount of media is weighed, heated and dissolved. It is autoclaved at 121 °C for 15-20 minutes. It is brought out from autoclave and cooled at 45-50 ° C. This task can also be performed at water bath. Sterilized blood of sheep/rabbit (5-10%) of total media is added and cooled slowly. The added blood should not contain any air bubbles. Wait for 15-20 minutes and let it fix at room temperature. The surface of media in Petri Dish should be leveled to 4 mm and refrigerated. To analyze the contamination it should be kept on room temperature for 1 day.
5.       Chocolate agar: it is chocolate colored agar. This media is used for the growth of delicate bacteria. While preparing this media blood agar is hemolysed and heated until chocolate color appears. It is used for the growth of gonococcus, nemococcus and hemophilusbacteria.

Reference: veterinary prayogshalagyan by Dr. jibaccha shah

6.2 sample collection for bacteriology
6.3 inoculations of media from various types of specimen
Generally 2 methods of inoculation of media are done.
1.      Plate culture
2.      Testube culture
1.      Plate culture: Solid state of media like nutrient agar,blood agar and macConkey agar prepared in Petri Dish are incubated at 37 °C for 10 minutes to dry the moisture content on the Petri Dish
Inoculating method:
ü  Heat the inoculating loop on the Bunsen burner until gets red.
ü  Dip the inoculating loop on the sample and stab the inoculating loop (3-4 lines) on the media as shown in the figure.

ü  Again heat the inoculating loop till it gets red let it cool and again stab the inoculating loop (3-4lines) on the media from another corner as shown in the figure.

ü  Again heat the inoculating loop till it gets red let it cool and again stab the inoculating loop (3-4lines) on the media from another corner as shown in the figure.
ü  Label the Medias and incubate it at 37 °C on incubator for 24-48 hours.
ü  After 24-48 hours examine the bacterial colonies present on the Medias. If the sample is of lungs, liver, heart or any tissues cut it with the help of sterilized scissors. The liquid obtained while cutting the samples should be again inoculated with the help of inoculating loop.
Inoculation of culture on test tube
1.      Slope method
2.      Inoculation on broth 
1.      Slope method(inoculating on slope media):
 In this method straight inoculating needle is used.
ü  Heat the straight inoculating needle on the Bunsen burner until it gets red
ü  When the needle gets cool stab a vertical line on the slope media.
ü  Inoculate zigzag line with the help of inoculating loop on the vertical line stabbed by the inoculating wire.
2.      Inoculation on broth (liquid) media
ü  If the sample to be inoculated is on liquid state then inoculation should be done with the help of sterilized Pasteur pipette on broth or other liquid media.
ü  If Pasteur pipette is not available then inoculating loop should be used for inoculation.
ü  Inoculating loop should be heated at first and let to cool down.
ü  While using inoculating loop, at first the inoculating loop should be dipped on the sample and the sample should be transferred to broth.
ü  In case of tissue sample, it should be cut into small pieces and a piece of tissue should be kept on broth.
ü  After performing inoculation the media should be kept at 37 °C on incubator for 24-48 hours.

6.4 Examination of culture
 We can view the growth of the bacterial colonies on culture plates with naked eyes. The structures of the colonies also help on distinguishing the bacteria.
1.      Size The study of the bacterial colonies can be done by following criteria.
2.      Shape
3.      Smell
4.      Color
5.      Consistency
6.      Opacity etc
1.      Size: observe the size of the colonies, colonies are measured on millimeter. The classification of colonies can be done according to their size as follows.
ü  Tiny colonies= 0.1 millimeter
ü  Small colonies= 0.5-1 millimeter
ü  Medium colonies= 1-2 millimeter
ü  Large colonies=2-3 millimeter
The colony of streptococcus bacteria is very small.
2.      Shape:
ü  The shapes of the colony should be observed. The general shapes of the colonies are round, irregular, lobate, rizoidetc
ü  Observe the part of the colonies whether they are elevated, flat, raised, convex etc
ü  The margin of the colonies should be examined whether it is filamentous or lobate margin.
ü  The surface of the colonies should be examined whether it is smooth, rough or papillae shaped.
The shape of the colony of bacillus bacteria is large and slightly dry.
3.      Smell:
The smell of the some bacteria is of unique type. Proteus bacteria have ammonical smell, the growth of this bacteria occurs all over the plate which is known as swarming growth.
4.      Color:
The general color of the bacterial colonies is red, white, green, yellow etc. if the bacterial colonies acquire pink color on MacConkey’s agar , we can understand that bacteria is lactose fermenting bacteria. Staphylococcus epidermis comprises of white color whereas staphylococcus aureus comprises of slightly yellow colonies. Micrococcus comprises of yellow or pink colonies likewise on MacConkey’s agar E.coli comprise of pink colony.
5.      Consistency:
Examine whether the colonies are sticky or non sticky.
6.      Opacity:
Bacterial colonies are transparent, translucent or opaque. On blood agar some bacterial colonies show hemolysis. Streptococcus aureus create hemolysis on blood agar. On blood agar Streptococcus pyogens create hemolysis around the colonies.

6.5  Gram’s staining methods
This method was founded by the scientist named Gram on 1884 for staining the bacteria. The bacteria are classified according to the color obtained by them while reacting with gram’s stain. All Bacteria are classified under 2 groups
1.      Gram positive bacteria
2.      Gram negative bacteria
Principle:
 This principle is based upon the presence of lipid. Gram positive bacteria contains low lipid and they have contains small pores on their cell walls due to which decoloriser does not get entrance and the bacteria take the stain of the crystal violet, as a result gram positive bacteria obtain blue color while reacting with gram stain.
 Gram negative bacteria contains high lipid and the cell wall of the gram negative bacteria contains large pores. Because of large pores on cell wall, decoloriser (acetone) enters into the cell wall and removes the color of crystal violet and after while the cell wall takes the color of counter stain (safranin). Due to this reason gram negative bacterium gives red color on gram staining.
The PH of gram positive bacteria is (2-3) and the PH of gram negative bacteria is (4-5)



6.6  Examination of milk by CMT
CMT is done on laboratory to test whether the milk sample is infected with the bacteria causing mastitis or not.
CMT reagent can be prepared on the lab by mixing the following reagents
Name of the reagent
Amount of the reagent
Sodium hydroxide
1.5 gm
Teepol
0.5 ml
Bromothylene blue
0.01 ml
Distilled water
100 ml

Test method:
ü  The plastic paddles containing four cups which is known as CMT paddle is used to test the milk by this method.
ü  Place 3 ml of milk on each cups
ü  Mix 3 ml of reagent on each cup. Move the paddle on circular motion and watch the result after 20 seconds.
ü  If the tested sample is Mastitis positive then the mixture of milk and reagent become thick, viscous.
ü  This method can be applied on Petri Dish also.
The report of CMT on lab should be made by following the rules listed below
(-) negative= if there is no change in the mixture (0-2, 00,000 somatic cell range)
(+) trace= if the mixture contains 1-2 granules (2, 00,000-4, 00,000 somatic cell range)
(++) weak positive= if the mixture is viscous (4, 00,000-12, 00,000 somatic cell range)
(+++) distinct positive= if the mixture is highly viscous (12, 00,000-50, 00,000 somatic cell range)
(++++) severe positive= if the somatic cell range is more than 50, 00,000


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